PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1310s0011.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 187aa    MW: 21467.3 Da    PI: 5.4818
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1310s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.85.1e-56411451102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlr+w+h+eenkrrtl+k+diaaa++rtd
  Cagra.1310s0011.1.p  41 QLQMFWANQmqeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTD 130
                          89******988889**************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          +fdflvdi+prdelk
  Cagra.1310s0011.1.p 131 VFDFLVDIIPRDELK 145
                          ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.28E-3521135IPR009072Histone-fold
PfamPF008084.0E-2263126IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.3E-3864141IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQPEEGQAQ QGMMDYVPPP HTYQSNAASH MAFQQAHHNH QLQMFWANQM QEIEQTTDFK  60
NHTLPLARIK KIMKADEDVR MISAEAPVIF AKACEMFILE LTLRAWIHTE ENKRRTLQKN  120
DIAAAISRTD VFDFLVDIIP RDELKEDGLG VTKGTVPSLV GSPPYYYLQQ QGMIPHWPQE  180
QHHDDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-424214119119HapE
4g92_C1e-424214119119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0098941e-175AC009894.2 Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence.
GenBankAC0691591e-175AC069159.8 Arabidopsis thaliana chromosome 1 BAC F14G9 genomic sequence, complete sequence.
GenBankAY0724111e-175AY072411.1 Arabidopsis thaliana transcription factor, putative (At1g56170) mRNA, complete cds.
GenBankAY1147041e-175AY114704.1 Arabidopsis thaliana putative transcription factor (At1g56170) mRNA, complete cds.
GenBankCP0026841e-175CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306507.11e-137hypothetical protein CARUB_v10012495mg
SwissprotQ8LCG71e-106NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLR0ILF81e-137R0ILF8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.1__4640__AT1G56170.21e-110(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-108nuclear factor Y, subunit C2